臺灣次世代基因定序檢測實作指引
0.1.0 - ci-build

臺灣次世代基因定序檢測實作指引 - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Resource Profile: 基因資訊-Observation GeneInfo TWNGS

Official URL: http://example.org/StructureDefinition/Observation-geneInfo-twngs Version: 0.1.0
Draft as of 2026-01-13 Computable Name: ObservationGeneInfoTWNGS

此Observation GeneInfo TWNGS Profile說明本IG如何進一步定義FHIR的Observation Resource以呈現次世代基因定序檢測之其他變異影響之基因資訊

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Observation C 0..* Observation Measurements and simple assertions
Constraints: obs-6, obs-7
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 1..1 Identifier [案件流水號]，編號由「院所代碼(10碼)＋醫事類別(2碼)+費用年月(yyyymm01，8碼)+申報類別(1送核/2補報)＋申報日期(yyyymmdd，8碼，填寫為補報時才會有這個日期)」組成。
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
.... value SΣ 0..1 string The value that is unique
Example General: 123456
... code SΣ 1..1 CodeableConcept Type of observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
.... coding Σ 1..1 Coding Code defined by a terminology system
..... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://loinc.org
..... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: 51969-4
... subject SΣ 1..1 Reference(病人資訊-Patient TWNGS) 病人資訊
... effective[x] SΣ 1..1 dateTime [NGS基因檢測日期]
... specimen S 0..1 Reference(基因檢測檢體-Specimen TWNGS) 基因檢測檢體類型
... device S 0..1 Reference(基因定序檢測裝置-Device TWNGS) 基因定序儀型號，檢體病理編號
... derivedFrom SΣ 0..* Reference(基因報告-DocumentReference TWNGS) Related measurements the observation is made from
... Slices for component SΣ 1..* BackboneElement Component results
Slice: Unordered, Open by value:code.coding.code
.... component:All Slices Content/Rules for all slices
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code Σ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
.... component:testGeneList SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testGeneList
..... value[x] SΣ 1..1 string [完整基因清單]
.... component:testTargetGeneNumber SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testTargetGeneNumber
..... value[x] SΣ 1..1 Quantity [檢測目標基因個數]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 0..1 string Unit representation
.... component:ngsLibraryPrepKit SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: ngsLibraryPrepKit
..... value[x] SΣ 1..1 string [建庫試劑組廠牌]
.... component:geneTestTotalReads SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestTotalReads
..... value[x] SΣ 1..1 Quantity [定序總讀數]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
.... component:geneTestMeanDepth SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestMeanDepth
..... value[x] SΣ 1..1 Quantity [平均測序深度]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
.... component:refSeqAssemblyVersion SΣ 1..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: refSeqAssemblyVersion
..... value[x] SΣ 1..1 string [人類參考基因組版本]
.... component:percentMappedReads SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: percentMappedReads
..... value[x] SΣ 1..1 Quantity [對準成功率]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 1..1 string Unit representation
Required Pattern: %
...... system ΣC 0..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
...... code Σ 0..1 code Coded form of the unit
Required Pattern: %
.... component:tumorGeneVarAssessment SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: tumorGeneVarAssessment
..... value[x] SΣ 1..1 CodeableConcept [腫瘤基因檢測數據判讀]
...... coding Σ 0..* Coding Code defined by a terminology system
Binding: 腫瘤基因檢測數據判讀值集 (required)
.... component:geneTestClinicalAssessment SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: clinicalInterpretation
..... value[x] SΣ 1..1 string [基因臨床判讀結果]

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Observation.identifier.​use Base required IdentifierUse 📍4.0.1 FHIR Std.
Observation.status Base required ObservationStatus 📍4.0.1 FHIR Std.
Observation.code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestMeanDepth.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​value[x].coding Base required 腫瘤基因檢測數據判讀值集 📦0.1.0 This IG
Observation.component:geneTestClinicalAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG

Constraints

Id Grade Path(s) Description Expression
dom-2 error Observation If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Observation If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Observation If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Observation If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Observation A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
obs-6 error Observation dataAbsentReason SHALL only be present if Observation.value[x] is not present dataAbsentReason.empty() or value.empty()
obs-7 error Observation If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()

This structure is derived from Observation

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Observation Observation
... identifier S 1..1 Identifier [案件流水號]，編號由「院所代碼(10碼)＋醫事類別(2碼)+費用年月(yyyymm01，8碼)+申報類別(1送核/2補報)＋申報日期(yyyymmdd，8碼，填寫為補報時才會有這個日期)」組成。
.... value S 0..1 string The value that is unique
... code S 1..1 CodeableConcept Type of observation (code / type)
.... coding 1..1 Coding Code defined by a terminology system
..... system S 1..1 uri Identity of the terminology system
Required Pattern: http://loinc.org
..... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: 51969-4
... subject S 1..1 Reference(病人資訊-Patient TWNGS) 病人資訊
... specimen S 0..1 Reference(基因檢測檢體-Specimen TWNGS) 基因檢測檢體類型
... device S 0..1 Reference(基因定序檢測裝置-Device TWNGS) 基因定序儀型號，檢體病理編號
... derivedFrom S 0..* Reference(基因報告-DocumentReference TWNGS) Related measurements the observation is made from
... Slices for component S 1..* BackboneElement Component results
Slice: Unordered, Open by value:code.coding.code
.... component:testGeneList S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: testGeneList
..... value[x] S 1..1 string [完整基因清單]
.... component:testTargetGeneNumber S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: testTargetGeneNumber
..... value[x] S 1..1 Quantity [檢測目標基因個數]
...... value S 1..1 decimal Numerical value (with implicit precision)
...... unit S 0..1 string Unit representation
.... component:ngsLibraryPrepKit S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: ngsLibraryPrepKit
..... value[x] S 1..1 string [建庫試劑組廠牌]
.... component:geneTestTotalReads S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestTotalReads
..... value[x] S 1..1 Quantity [定序總讀數]
...... value S 1..1 decimal Numerical value (with implicit precision)
.... component:geneTestMeanDepth S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestMeanDepth
..... value[x] S 1..1 Quantity [平均測序深度]
...... value S 1..1 decimal Numerical value (with implicit precision)
.... component:refSeqAssemblyVersion S 1..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: refSeqAssemblyVersion
..... value[x] S 1..1 string [人類參考基因組版本]
.... component:percentMappedReads S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: percentMappedReads
..... value[x] S 1..1 Quantity [對準成功率]
...... value S 1..1 decimal Numerical value (with implicit precision)
...... unit S 1..1 string Unit representation
Required Pattern: %
...... system 0..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
...... code 0..1 code Coded form of the unit
Required Pattern: %
.... component:tumorGeneVarAssessment S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: tumorGeneVarAssessment
..... value[x] S 1..1 CodeableConcept [腫瘤基因檢測數據判讀]
...... coding 0..* Coding Code defined by a terminology system
Binding: 腫瘤基因檢測數據判讀值集 (required)
.... component:geneTestClinicalAssessment S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: clinicalInterpretation
..... value[x] S 1..1 string [基因臨床判讀結果]

doco Documentation for this format

Terminology Bindings (Differential)

Path Status Usage ValueSet Version Source
Observation.component:testGeneList.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:ngsLibraryPrepKit.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestMeanDepth.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:refSeqAssemblyVersion.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​value[x].coding Base required 腫瘤基因檢測數據判讀值集 📦0.1.0 This IG
Observation.component:geneTestClinicalAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Observation C 0..* Observation Measurements and simple assertions
Constraints: obs-6, obs-7
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... language 0..1 code Language of the resource content
Binding: CommonLanguages (preferred): A human language.
Additional BindingsPurpose
AllLanguages Max Binding
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... extension 0..* Extension Additional content defined by implementations
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 1..1 Identifier [案件流水號]，編號由「院所代碼(10碼)＋醫事類別(2碼)+費用年月(yyyymm01，8碼)+申報類別(1送核/2補報)＋申報日期(yyyymmdd，8碼，填寫為補報時才會有這個日期)」組成。
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
.... type Σ 0..1 CodeableConcept Description of identifier
Binding: Identifier Type Codes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.
.... system Σ 0..1 uri The namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
.... value SΣ 0..1 string The value that is unique
Example General: 123456
.... period Σ 0..1 Period Time period when id is/was valid for use
.... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
... basedOn Σ 0..* Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest) Fulfills plan, proposal or order
... partOf Σ 0..* Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy) Part of referenced event
... status ?!Σ 1..1 code registered | preliminary | final | amended +
Binding: ObservationStatus (required): Codes providing the status of an observation.
... category 0..* CodeableConcept Classification of type of observation
Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories.
... code SΣ 1..1 CodeableConcept Type of observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... coding Σ 1..1 Coding Code defined by a terminology system
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://loinc.org
..... version Σ 0..1 string Version of the system - if relevant
..... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: 51969-4
..... display Σ 0..1 string Representation defined by the system
..... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
... subject SΣ 1..1 Reference(病人資訊-Patient TWNGS) 病人資訊
... focus Σ 0..* Reference(Resource) What the observation is about, when it is not about the subject of record
... encounter Σ 0..1 Reference(Encounter) Healthcare event during which this observation is made
... effective[x] SΣ 1..1 dateTime [NGS基因檢測日期]
... issued Σ 0..1 instant Date/Time this version was made available
... performer Σ 0..* Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson) Who is responsible for the observation
... value[x] ΣC 0..1 Actual result
.... valueQuantity Quantity
.... valueCodeableConcept CodeableConcept
.... valueString string
.... valueBoolean boolean
.... valueInteger integer
.... valueRange Range
.... valueRatio Ratio
.... valueSampledData SampledData
.... valueTime time
.... valueDateTime dateTime
.... valuePeriod Period
... dataAbsentReason C 0..1 CodeableConcept Why the result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
... note 0..* Annotation Comments about the observation
... bodySite 0..1 CodeableConcept Observed body part
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
... method 0..1 CodeableConcept How it was done
Binding: ObservationMethods (example): Methods for simple observations.
... specimen S 0..1 Reference(基因檢測檢體-Specimen TWNGS) 基因檢測檢體類型
... device S 0..1 Reference(基因定序檢測裝置-Device TWNGS) 基因定序儀型號，檢體病理編號
... referenceRange C 0..* BackboneElement Provides guide for interpretation
Constraints: obs-3
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... low C 0..1 SimpleQuantity(4.0.1) Low Range, if relevant
.... high C 0..1 SimpleQuantity(4.0.1) High Range, if relevant
.... type 0..1 CodeableConcept Reference range qualifier
Binding: ObservationReferenceRangeMeaningCodes (preferred): Code for the meaning of a reference range.
.... appliesTo 0..* CodeableConcept Reference range population
Binding: ObservationReferenceRangeAppliesToCodes (example): Codes identifying the population the reference range applies to.
.... age 0..1 Range Applicable age range, if relevant
.... text 0..1 string Text based reference range in an observation
... hasMember Σ 0..* Reference(Observation | QuestionnaireResponse | MolecularSequence) Related resource that belongs to the Observation group
... derivedFrom SΣ 0..* Reference(基因報告-DocumentReference TWNGS) Related measurements the observation is made from
... Slices for component SΣ 1..* BackboneElement Component results
Slice: Unordered, Open by value:code.coding.code
.... component:All Slices Content/Rules for all slices
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code Σ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
..... value[x] Σ 0..1 Actual component result
...... valueQuantity Quantity
...... valueCodeableConcept CodeableConcept
...... valueString string
...... valueBoolean boolean
...... valueInteger integer
...... valueRange Range
...... valueRatio Ratio
...... valueSampledData SampledData
...... valueTime time
...... valueDateTime dateTime
...... valuePeriod Period
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:testGeneList SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testGeneList
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [完整基因清單]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:testTargetGeneNumber SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testTargetGeneNumber
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [檢測目標基因個數]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 0..1 string Unit representation
...... system ΣC 0..1 uri System that defines coded unit form
...... code Σ 0..1 code Coded form of the unit
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:ngsLibraryPrepKit SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: ngsLibraryPrepKit
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [建庫試劑組廠牌]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:geneTestTotalReads SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestTotalReads
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [定序總讀數]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit Σ 0..1 string Unit representation
...... system ΣC 0..1 uri System that defines coded unit form
...... code Σ 0..1 code Coded form of the unit
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:geneTestMeanDepth SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestMeanDepth
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [平均測序深度]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit Σ 0..1 string Unit representation
...... system ΣC 0..1 uri System that defines coded unit form
...... code Σ 0..1 code Coded form of the unit
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:refSeqAssemblyVersion SΣ 1..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: refSeqAssemblyVersion
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [人類參考基因組版本]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:percentMappedReads SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: percentMappedReads
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [對準成功率]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 1..1 string Unit representation
Required Pattern: %
...... system ΣC 0..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
...... code Σ 0..1 code Coded form of the unit
Required Pattern: %
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:tumorGeneVarAssessment SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: tumorGeneVarAssessment
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 CodeableConcept [腫瘤基因檢測數據判讀]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding Σ 0..* Coding Code defined by a terminology system
Binding: 腫瘤基因檢測數據判讀值集 (required)
...... text Σ 0..1 string Plain text representation of the concept
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:geneTestClinicalAssessment SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: clinicalInterpretation
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [基因臨床判讀結果]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Observation.language Base preferred Common Languages 📍4.0.1 FHIR Std.
Observation.identifier.​use Base required IdentifierUse 📍4.0.1 FHIR Std.
Observation.identifier.​type Base extensible IdentifierType 📍4.0.1 FHIR Std.
Observation.status Base required ObservationStatus 📍4.0.1 FHIR Std.
Observation.category Base preferred Observation Category Codes 📍4.0.1 FHIR Std.
Observation.code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Observation.method Base example Observation Methods 📍4.0.1 FHIR Std.
Observation.referenceRange.​type Base preferred Observation Reference Range Meaning Codes 📍4.0.1 FHIR Std.
Observation.referenceRange.​appliesTo Base example Observation Reference Range Applies To Codes 📍4.0.1 FHIR Std.
Observation.component.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testGeneList.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:ngsLibraryPrepKit.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestMeanDepth.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:refSeqAssemblyVersion.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​value[x].coding Base required 腫瘤基因檢測數據判讀值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestClinicalAssessment.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Observation If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Observation If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Observation If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Observation If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Observation A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
obs-3 error Observation.referenceRange Must have at least a low or a high or text low.exists() or high.exists() or text.exists()
obs-6 error Observation dataAbsentReason SHALL only be present if Observation.value[x] is not present dataAbsentReason.empty() or value.empty()
obs-7 error Observation If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()

This structure is derived from Observation

Summary

Mandatory: 12 elements(37 nested mandatory elements)
Must-Support: 71 elements

Structures

This structure refers to these other structures:

Slices

This structure defines the following Slices:

  • The element 1 is sliced based on the values of Observation.component

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Observation C 0..* Observation Measurements and simple assertions
Constraints: obs-6, obs-7
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 1..1 Identifier [案件流水號]，編號由「院所代碼(10碼)＋醫事類別(2碼)+費用年月(yyyymm01，8碼)+申報類別(1送核/2補報)＋申報日期(yyyymmdd，8碼，填寫為補報時才會有這個日期)」組成。
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
.... value SΣ 0..1 string The value that is unique
Example General: 123456
... code SΣ 1..1 CodeableConcept Type of observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
.... coding Σ 1..1 Coding Code defined by a terminology system
..... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://loinc.org
..... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: 51969-4
... subject SΣ 1..1 Reference(病人資訊-Patient TWNGS) 病人資訊
... effective[x] SΣ 1..1 dateTime [NGS基因檢測日期]
... specimen S 0..1 Reference(基因檢測檢體-Specimen TWNGS) 基因檢測檢體類型
... device S 0..1 Reference(基因定序檢測裝置-Device TWNGS) 基因定序儀型號，檢體病理編號
... derivedFrom SΣ 0..* Reference(基因報告-DocumentReference TWNGS) Related measurements the observation is made from
... Slices for component SΣ 1..* BackboneElement Component results
Slice: Unordered, Open by value:code.coding.code
.... component:All Slices Content/Rules for all slices
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code Σ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
.... component:testGeneList SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testGeneList
..... value[x] SΣ 1..1 string [完整基因清單]
.... component:testTargetGeneNumber SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testTargetGeneNumber
..... value[x] SΣ 1..1 Quantity [檢測目標基因個數]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 0..1 string Unit representation
.... component:ngsLibraryPrepKit SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: ngsLibraryPrepKit
..... value[x] SΣ 1..1 string [建庫試劑組廠牌]
.... component:geneTestTotalReads SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestTotalReads
..... value[x] SΣ 1..1 Quantity [定序總讀數]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
.... component:geneTestMeanDepth SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestMeanDepth
..... value[x] SΣ 1..1 Quantity [平均測序深度]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
.... component:refSeqAssemblyVersion SΣ 1..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: refSeqAssemblyVersion
..... value[x] SΣ 1..1 string [人類參考基因組版本]
.... component:percentMappedReads SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: percentMappedReads
..... value[x] SΣ 1..1 Quantity [對準成功率]
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 1..1 string Unit representation
Required Pattern: %
...... system ΣC 0..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
...... code Σ 0..1 code Coded form of the unit
Required Pattern: %
.... component:tumorGeneVarAssessment SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: tumorGeneVarAssessment
..... value[x] SΣ 1..1 CodeableConcept [腫瘤基因檢測數據判讀]
...... coding Σ 0..* Coding Code defined by a terminology system
Binding: 腫瘤基因檢測數據判讀值集 (required)
.... component:geneTestClinicalAssessment SΣ 0..1 BackboneElement Component results
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: clinicalInterpretation
..... value[x] SΣ 1..1 string [基因臨床判讀結果]

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Observation.identifier.​use Base required IdentifierUse 📍4.0.1 FHIR Std.
Observation.status Base required ObservationStatus 📍4.0.1 FHIR Std.
Observation.code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestMeanDepth.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​value[x].coding Base required 腫瘤基因檢測數據判讀值集 📦0.1.0 This IG
Observation.component:geneTestClinicalAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG

Constraints

Id Grade Path(s) Description Expression
dom-2 error Observation If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Observation If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Observation If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Observation If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Observation A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
obs-6 error Observation dataAbsentReason SHALL only be present if Observation.value[x] is not present dataAbsentReason.empty() or value.empty()
obs-7 error Observation If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()

Differential View

This structure is derived from Observation

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Observation Observation
... identifier S 1..1 Identifier [案件流水號]，編號由「院所代碼(10碼)＋醫事類別(2碼)+費用年月(yyyymm01，8碼)+申報類別(1送核/2補報)＋申報日期(yyyymmdd，8碼，填寫為補報時才會有這個日期)」組成。
.... value S 0..1 string The value that is unique
... code S 1..1 CodeableConcept Type of observation (code / type)
.... coding 1..1 Coding Code defined by a terminology system
..... system S 1..1 uri Identity of the terminology system
Required Pattern: http://loinc.org
..... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: 51969-4
... subject S 1..1 Reference(病人資訊-Patient TWNGS) 病人資訊
... specimen S 0..1 Reference(基因檢測檢體-Specimen TWNGS) 基因檢測檢體類型
... device S 0..1 Reference(基因定序檢測裝置-Device TWNGS) 基因定序儀型號，檢體病理編號
... derivedFrom S 0..* Reference(基因報告-DocumentReference TWNGS) Related measurements the observation is made from
... Slices for component S 1..* BackboneElement Component results
Slice: Unordered, Open by value:code.coding.code
.... component:testGeneList S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: testGeneList
..... value[x] S 1..1 string [完整基因清單]
.... component:testTargetGeneNumber S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: testTargetGeneNumber
..... value[x] S 1..1 Quantity [檢測目標基因個數]
...... value S 1..1 decimal Numerical value (with implicit precision)
...... unit S 0..1 string Unit representation
.... component:ngsLibraryPrepKit S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: ngsLibraryPrepKit
..... value[x] S 1..1 string [建庫試劑組廠牌]
.... component:geneTestTotalReads S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestTotalReads
..... value[x] S 1..1 Quantity [定序總讀數]
...... value S 1..1 decimal Numerical value (with implicit precision)
.... component:geneTestMeanDepth S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestMeanDepth
..... value[x] S 1..1 Quantity [平均測序深度]
...... value S 1..1 decimal Numerical value (with implicit precision)
.... component:refSeqAssemblyVersion S 1..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: refSeqAssemblyVersion
..... value[x] S 1..1 string [人類參考基因組版本]
.... component:percentMappedReads S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: percentMappedReads
..... value[x] S 1..1 Quantity [對準成功率]
...... value S 1..1 decimal Numerical value (with implicit precision)
...... unit S 1..1 string Unit representation
Required Pattern: %
...... system 0..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
...... code 0..1 code Coded form of the unit
Required Pattern: %
.... component:tumorGeneVarAssessment S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: tumorGeneVarAssessment
..... value[x] S 1..1 CodeableConcept [腫瘤基因檢測數據判讀]
...... coding 0..* Coding Code defined by a terminology system
Binding: 腫瘤基因檢測數據判讀值集 (required)
.... component:geneTestClinicalAssessment S 0..1 BackboneElement Component results
..... code S 1..1 CodeableConcept Type of component observation (code / type)
...... coding S 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... system S 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... code S 1..1 code Symbol in syntax defined by the system
Required Pattern: clinicalInterpretation
..... value[x] S 1..1 string [基因臨床判讀結果]

doco Documentation for this format

Terminology Bindings (Differential)

Path Status Usage ValueSet Version Source
Observation.component:testGeneList.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:ngsLibraryPrepKit.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestMeanDepth.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:refSeqAssemblyVersion.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​value[x].coding Base required 腫瘤基因檢測數據判讀值集 📦0.1.0 This IG
Observation.component:geneTestClinicalAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Observation C 0..* Observation Measurements and simple assertions
Constraints: obs-6, obs-7
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... language 0..1 code Language of the resource content
Binding: CommonLanguages (preferred): A human language.
Additional BindingsPurpose
AllLanguages Max Binding
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... extension 0..* Extension Additional content defined by implementations
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
... identifier SΣ 1..1 Identifier [案件流水號]，編號由「院所代碼(10碼)＋醫事類別(2碼)+費用年月(yyyymm01，8碼)+申報類別(1送核/2補報)＋申報日期(yyyymmdd，8碼，填寫為補報時才會有這個日期)」組成。
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... use ?!Σ 0..1 code usual | official | temp | secondary | old (If known)
Binding: IdentifierUse (required): Identifies the purpose for this identifier, if known .
.... type Σ 0..1 CodeableConcept Description of identifier
Binding: Identifier Type Codes (extensible): A coded type for an identifier that can be used to determine which identifier to use for a specific purpose.
.... system Σ 0..1 uri The namespace for the identifier value
Example General: http://www.acme.com/identifiers/patient
.... value SΣ 0..1 string The value that is unique
Example General: 123456
.... period Σ 0..1 Period Time period when id is/was valid for use
.... assigner Σ 0..1 Reference(Organization) Organization that issued id (may be just text)
... basedOn Σ 0..* Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest) Fulfills plan, proposal or order
... partOf Σ 0..* Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy) Part of referenced event
... status ?!Σ 1..1 code registered | preliminary | final | amended +
Binding: ObservationStatus (required): Codes providing the status of an observation.
... category 0..* CodeableConcept Classification of type of observation
Binding: ObservationCategoryCodes (preferred): Codes for high level observation categories.
... code SΣ 1..1 CodeableConcept Type of observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
.... coding Σ 1..1 Coding Code defined by a terminology system
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
..... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://loinc.org
..... version Σ 0..1 string Version of the system - if relevant
..... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: 51969-4
..... display Σ 0..1 string Representation defined by the system
..... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
.... text Σ 0..1 string Plain text representation of the concept
... subject SΣ 1..1 Reference(病人資訊-Patient TWNGS) 病人資訊
... focus Σ 0..* Reference(Resource) What the observation is about, when it is not about the subject of record
... encounter Σ 0..1 Reference(Encounter) Healthcare event during which this observation is made
... effective[x] SΣ 1..1 dateTime [NGS基因檢測日期]
... issued Σ 0..1 instant Date/Time this version was made available
... performer Σ 0..* Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson) Who is responsible for the observation
... value[x] ΣC 0..1 Actual result
.... valueQuantity Quantity
.... valueCodeableConcept CodeableConcept
.... valueString string
.... valueBoolean boolean
.... valueInteger integer
.... valueRange Range
.... valueRatio Ratio
.... valueSampledData SampledData
.... valueTime time
.... valueDateTime dateTime
.... valuePeriod Period
... dataAbsentReason C 0..1 CodeableConcept Why the result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
... note 0..* Annotation Comments about the observation
... bodySite 0..1 CodeableConcept Observed body part
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
... method 0..1 CodeableConcept How it was done
Binding: ObservationMethods (example): Methods for simple observations.
... specimen S 0..1 Reference(基因檢測檢體-Specimen TWNGS) 基因檢測檢體類型
... device S 0..1 Reference(基因定序檢測裝置-Device TWNGS) 基因定序儀型號，檢體病理編號
... referenceRange C 0..* BackboneElement Provides guide for interpretation
Constraints: obs-3
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
.... low C 0..1 SimpleQuantity(4.0.1) Low Range, if relevant
.... high C 0..1 SimpleQuantity(4.0.1) High Range, if relevant
.... type 0..1 CodeableConcept Reference range qualifier
Binding: ObservationReferenceRangeMeaningCodes (preferred): Code for the meaning of a reference range.
.... appliesTo 0..* CodeableConcept Reference range population
Binding: ObservationReferenceRangeAppliesToCodes (example): Codes identifying the population the reference range applies to.
.... age 0..1 Range Applicable age range, if relevant
.... text 0..1 string Text based reference range in an observation
... hasMember Σ 0..* Reference(Observation | QuestionnaireResponse | MolecularSequence) Related resource that belongs to the Observation group
... derivedFrom SΣ 0..* Reference(基因報告-DocumentReference TWNGS) Related measurements the observation is made from
... Slices for component SΣ 1..* BackboneElement Component results
Slice: Unordered, Open by value:code.coding.code
.... component:All Slices Content/Rules for all slices
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code Σ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
..... value[x] Σ 0..1 Actual component result
...... valueQuantity Quantity
...... valueCodeableConcept CodeableConcept
...... valueString string
...... valueBoolean boolean
...... valueInteger integer
...... valueRange Range
...... valueRatio Ratio
...... valueSampledData SampledData
...... valueTime time
...... valueDateTime dateTime
...... valuePeriod Period
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:testGeneList SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testGeneList
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [完整基因清單]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:testTargetGeneNumber SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: testTargetGeneNumber
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [檢測目標基因個數]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 0..1 string Unit representation
...... system ΣC 0..1 uri System that defines coded unit form
...... code Σ 0..1 code Coded form of the unit
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:ngsLibraryPrepKit SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: ngsLibraryPrepKit
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [建庫試劑組廠牌]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:geneTestTotalReads SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestTotalReads
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [定序總讀數]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit Σ 0..1 string Unit representation
...... system ΣC 0..1 uri System that defines coded unit form
...... code Σ 0..1 code Coded form of the unit
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:geneTestMeanDepth SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: geneTestMeanDepth
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [平均測序深度]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit Σ 0..1 string Unit representation
...... system ΣC 0..1 uri System that defines coded unit form
...... code Σ 0..1 code Coded form of the unit
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:refSeqAssemblyVersion SΣ 1..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: refSeqAssemblyVersion
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [人類參考基因組版本]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:percentMappedReads SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: percentMappedReads
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 Quantity [對準成功率]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... value SΣ 1..1 decimal Numerical value (with implicit precision)
...... comparator ?!Σ 0..1 code < | <= | >= | > - how to understand the value
Binding: QuantityComparator (required): How the Quantity should be understood and represented.
...... unit SΣ 1..1 string Unit representation
Required Pattern: %
...... system ΣC 0..1 uri System that defines coded unit form
Required Pattern: http://unitsofmeasure.org
...... code Σ 0..1 code Coded form of the unit
Required Pattern: %
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:tumorGeneVarAssessment SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: tumorGeneVarAssessment
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 CodeableConcept [腫瘤基因檢測數據判讀]
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding Σ 0..* Coding Code defined by a terminology system
Binding: 腫瘤基因檢測數據判讀值集 (required)
...... text Σ 0..1 string Plain text representation of the concept
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result
.... component:geneTestClinicalAssessment SΣ 0..1 BackboneElement Component results
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
..... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
..... code SΣ 1..1 CodeableConcept Type of component observation (code / type)
Binding: LOINCCodes (example): Codes identifying names of simple observations.
...... id 0..1 string Unique id for inter-element referencing
...... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
...... coding SΣ 1..1 Coding Code defined by a terminology system
Binding: 基因檢測方式與品質資訊值集 (required)
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
....... system SΣ 1..1 uri Identity of the terminology system
Required Pattern: http://example.org/CodeSystem/gene-test-info-cs
....... version Σ 0..1 string Version of the system - if relevant
....... code SΣ 1..1 code Symbol in syntax defined by the system
Required Pattern: clinicalInterpretation
....... display Σ 0..1 string Representation defined by the system
....... userSelected Σ 0..1 boolean If this coding was chosen directly by the user
...... text Σ 0..1 string Plain text representation of the concept
..... value[x] SΣ 1..1 string [基因臨床判讀結果]
..... dataAbsentReason C 0..1 CodeableConcept Why the component result is missing
Binding: DataAbsentReason (extensible): Codes specifying why the result (Observation.value[x]) is missing.
..... interpretation 0..* CodeableConcept High, low, normal, etc.
Binding: ObservationInterpretationCodes (extensible): Codes identifying interpretations of observations.
..... referenceRange 0..* See referenceRange (Observation) Provides guide for interpretation of component result

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Observation.language Base preferred Common Languages 📍4.0.1 FHIR Std.
Observation.identifier.​use Base required IdentifierUse 📍4.0.1 FHIR Std.
Observation.identifier.​type Base extensible IdentifierType 📍4.0.1 FHIR Std.
Observation.status Base required ObservationStatus 📍4.0.1 FHIR Std.
Observation.category Base preferred Observation Category Codes 📍4.0.1 FHIR Std.
Observation.code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Observation.method Base example Observation Methods 📍4.0.1 FHIR Std.
Observation.referenceRange.​type Base preferred Observation Reference Range Meaning Codes 📍4.0.1 FHIR Std.
Observation.referenceRange.​appliesTo Base example Observation Reference Range Applies To Codes 📍4.0.1 FHIR Std.
Observation.component.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testGeneList.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:testGeneList.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:testTargetGeneNumber.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:testTargetGeneNumber.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:ngsLibraryPrepKit.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:ngsLibraryPrepKit.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestTotalReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:geneTestTotalReads.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestMeanDepth.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:geneTestMeanDepth.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:refSeqAssemblyVersion.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:refSeqAssemblyVersion.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:percentMappedReads.​value[x].comparator Base required QuantityComparator 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:percentMappedReads.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​value[x].coding Base required 腫瘤基因檢測數據判讀值集 📦0.1.0 This IG
Observation.component:tumorGeneVarAssessment.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:tumorGeneVarAssessment.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​code Base example LOINC Codes 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​code.coding Base required 基因檢測方式與品質資訊值集 📦0.1.0 This IG
Observation.component:geneTestClinicalAssessment.​dataAbsentReason Base extensible DataAbsentReason 📍4.0.1 FHIR Std.
Observation.component:geneTestClinicalAssessment.​interpretation Base extensible Observation Interpretation Codes 📍4.0.1 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Observation If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Observation If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Observation If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Observation If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Observation A resource should have narrative for robust management text.`div`.exists()
ele-1 error **ALL** elements All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error **ALL** extensions Must have either extensions or value[x], not both extension.exists() != value.exists()
obs-3 error Observation.referenceRange Must have at least a low or a high or text low.exists() or high.exists() or text.exists()
obs-6 error Observation dataAbsentReason SHALL only be present if Observation.value[x] is not present dataAbsentReason.empty() or value.empty()
obs-7 error Observation If Observation.code is the same as an Observation.component.code then the value element associated with the code SHALL NOT be present value.empty() or component.code.where(coding.intersect(%resource.code.coding).exists()).empty()

This structure is derived from Observation

Summary

Mandatory: 12 elements(37 nested mandatory elements)
Must-Support: 71 elements

Structures

This structure refers to these other structures:

Slices

This structure defines the following Slices:

  • The element 1 is sliced based on the values of Observation.component

 

Other representations of profile: CSV, Excel, Schematron