NGS IG
0.1.0 - ci-build

NGS IG - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Logical Model: NGSModel - Mappings

Draft as of 2025-03-15

Mappings for the NGSModel logical model.

Mappings for NGS (https://www.ghd.tw/cdm-fhir/)

NGSModel
ApplyModel
   patient
      patId病歷號:Patient.identifier.where(type.coding.code = 'MR').value
      idCard身分證字號:Patient.identifier.where(type.coding.code = 'NNxxx').value
      name姓名:Patient.name
      gender病人性別:Patient.gender
      birthday出生日期:Patient.birthDate
   hosp
      hospId醫事機構代碼:Organization.identifier.value
      expDate費用年月:DiagnosticReport.effective[x]:effectiveDateTime
      applType申報類別:Composition.type
      decDate申報日期:Composition.date
      casCatgory案件分類:Composition.category
      srialNum流水號:Bundle.identifier
   apply
      cancerDrugType基因定序檢測申請品項之醫令代碼:ServiceRequest.code.coding
      ngsTesNumNGS檢測編號(VPN取號):Observation.identifier.value
      genMethod基因檢測方法:Observation.method
      genDate基因檢測日期:Observation.effective[x]
   diagnosis
      diagDate診斷日期:Condition.recordedDate
      icd10cmCode國際疾病分類代碼:Condition.code
      diagCurrentStatus簡要病摘:Condition.note
   gene
      genTestCode基因檢測代碼:Observation.component.code.coding.code
      specimePathNo檢體病理編號:Specimen.identifier.value
      specimenType基因檢測檢體類型:Specimen.type.coding
      specimenSite標本來源部位:Specimen.collection.bodySite
      genOrg基因檢測機構:Organization.identifier.value
      mutationType基因突變類型:Observation.component.code.coding.code
      genResult基因檢測分析結果:Observation.valueCodeableConcept.coding.code
      genInterpretation基因臨床判讀結果:Observation.interpretation.coding.code
      reportResultString報告結果:DocumentReference.content.attachment.contentType
      genPdf基因報告(檔案路徑):DocumentReference.content.attachment.url
      genPdfTitle基因報告名稱:DocumentReference.content.attachment.title
      genTesList
         geneSymbol基因符號:Observation-NGS-GeneList.component.valueCodeableConcept.code.coding.code
         depthAvg平均測序深度:Observation-NGS-GeneList.component.valueQuantity
      genomicFindings基因組發現報告:Observation-NGS-GenomicFindings.code
         depth測序深度:Observation-NGS-GenomicFindings.component.value[x]:Quantity
         variantReads變異比例:Observation-NGS-GenomicFindings.component.value[x]:Quantity
         cnvNumber拷貝數變異:Observation-NGS-GenomicFindings.component.value[x]:Quantity
      seqNam定序儀名稱:Device.deviceName
      seqModel定序儀型號:Device.modelNumber